Andrew,
I have worked in a forging plant where operations allowed the oil to overheat and get very hot, over 180 F. This was on a large hydraulic press with a 5,000 gallon reservoir. Here are some of the problems you can see. Varnishing of relief valves and spool valves, causing the valves to stick and malfunction, pitting of components due to an increased AN, damage to components due to a breakdown of viscosity of the oil, and others. From experience I can tell you the best thing to do would be to flush the system and replace the oil. Also, once you have drained the system, remove all covers and do a very thorough cleaning of the inside of the tank.
The effort may seem great, but it will definitely pay for itself in the end. Good luck